Dr. Joël Pothier

ZHAW Life Sciences und Facility Management
Institut für Umwelt und Natürliche Ressourcen
Einsiedlerstrasse 34
8820 Wädenswil

+41 (0) 58 934 53 21
joel.pothier@zhaw.ch

Netzwerk

Mitglied in Netzwerken

Projekte

ActinOmics: Bioprospektion und Genomik von Actinobakterien isoliert aus der Marchica-Lagune / ProjektleiterIn / Projekt laufend
ToViPoRe: Massennachweis des Tomato Brown Rugose Fruit Virus durch Hochdurchsatz-Sequenzierung / ProjektleiterIn / Projekt laufend
EBDOmics – Comparative genomics of Enterobacter spp. causing Bulb Decay of Onions / Stellv. ProjektleiterIn / Projekt laufend
ChitinOMix – A multidisciplinary project to understand the effect of chitin soil amendment on the plant response, natural microbial community and the fate of human pathogenic bacteria / ProjektleiterIn / Projekt laufend
Comparative genomics of the plant pathogen Xanthomonas arboricola pv. pruni and related xanthomonads / ProjektleiterIn / Projekt laufend
MALDI-TOF MS for microorganism identification: from pattern recognition towards marker based approaches / ProjektleiterIn / Projekt laufend
Modernes Biodiversitätsmonitoring mit Next-Generation Sequencing (NGS-Methoden) / Teammitglied / Projekt abgeschlossen
Fire Blight App for Central Asia / Stellv. ProjektleiterIn / Projekt abgeschlossen
Akzeptanz einer App zur Kontaktnachverfolgung von SARS-CoV-2 in der Schweizer Bevölkerung / Teammitglied / Projekt abgeschlossen
Induktion der Wirkstoffbildung bei Actinomyceten / Co-ProjektleiterIn / Projekt abgeschlossen
MinION2FixID: fast and reliable legume root nodule bacteria identification using nanopore sequencing technology / Co-ProjektleiterIn / Projekt abgeschlossen
Xhortomics: Entwicklung von diagnostischen und epidemiologischen Hilfsmitteln für die Xanthomonas hortorum Spezies Gruppe basierend auf OMICs Technologien / Co-ProjektleiterIn / Projekt abgeschlossen
Auswirkung der Cryokonservierung auf genetischer Ebene am Beispiel der Rebe / Stellv. ProjektleiterIn / Projekt abgeschlossen
Development of a fast and exact method for R. solanacearum detection in Swiss surface water samples / Co-ProjektleiterIn / Projekt abgeschlossen
Characterization of nitrogen dynamics in an aquaponic system / Teammitglied / Projekt abgeschlossen
Vergleichende Genomik zur Abklärung der Insektenpathogenizität in Pflanzenassoziierte Pseudomonaden / Teammitglied / Projekt abgeschlossen
Sepsis-Associated Microorganisms in Brazilian Ambulatories (SAMBA) / Teammitglied / Projekt abgeschlossen
MycoTOF - Nachweis von mykotoxinbildenden Schimmelpilzen und Mykotoxinen / Co-ProjektleiterIn / Projekt abgeschlossen
COST Action – Sustainable production of high quality cherries for the European market / ProjektleiterIn / Projekt abgeschlossen
DROPSA – Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens / ProjektleiterIn / Projekt abgeschlossen
High-throughput proteomics of Thiodictyon synthrophicum strain Cad16T / ProjektleiterIn / Projekt abgeschlossen
Genomik und Transkriptomik von Erwinia und Pantoea / Teammitglied / Projekt abgeschlossen
In-depth molecular analysis of stool and water samples collected in Kampala, Uganda / ProjektleiterIn / Projekt abgeschlossen

Publikationen

Beiträge in wissenschaftlicher Zeitschrift, peer-reviewed

Kaufmann, Moritz; Li, Leilei; Van Poucke, Christof; Rhyner, Nicola; De Tender, Caroline; Uyttendaele, Mieke; Heyndrickx, Marc; Zipfel, Cyril; Pothier, Joël F.; Bart, Cottyn,

2024.

Soil type and associated microbiomes influences chitin’s growth-promotion effect in lettuce.

Phytobiomes Journal.

Verfügbar unter: https://doi.org/10.1094/PBIOMES-12-23-0132-R
Costa, Joana; Pothier, Joël F.; Bosis, Eran; Boch, Jens; Kölliker, Roland; Koebnik, Ralf,

2023.

A community-curated DokuWiki resource on diagnostics, diversity, pathogenicity and genetic control of Xanthomonads.

Molecular Plant-Microbe Interactions.

Verfügbar unter: https://doi.org/10.1094/MPMI-11-23-0184-FI
Kałużna, Monika; Prokić, Andjelka; Obradović, Aleksa; Weldon, William A.; Stockwell, Virginia O.; Pothier, Joël F.,

2023.

Specific and sensitive detection tools for Xanthomonas arboricola pv. corylina, the causal agent of bacterial blight of hazelnut, developed with comparative genomics.

Frontiers in Plant Science.

14(1254107).

Verfügbar unter: https://doi.org/10.3389/fpls.2023.1254107
Orfei, Benedetta; Pothier, Joël F.; Fenske, Linda; Blom, Jochen; Moretti, Chiaraluce; Buonaurio, Roberto; Smits, Theo H. M.,

2023.

Race-specific genotypes of Pseudomonas syringae pv. tomato are defined by the presence of mobile DNA elements within the genome.

Frontiers in Plant Science.

14(1197706).

Verfügbar unter: https://doi.org/10.3389/fpls.2023.1197706
Li, Leilei; Kaufmann, Moritz; Makechemu, Moffat; Van Poucke, Christof; De Keyser, Ellen; Uyttendaele, Mieke; Zipfel, Cyril; Cottyn, Bart; Pothier, Joël F.,

2023.

Assessment of transcriptional reprogramming of lettuce roots in response to chitin soil amendment.

Frontiers in Plant Science.

14(1158068).

Verfügbar unter: https://doi.org/10.3389/fpls.2023.1158068
Arend, Lavinia N.V.S.; Bergamo, Ricardo; Rocha, Fabiano B.; Bail, Larissa; Ito, Carmen; Baura, Valter A.; Balsanelli, Eduardo; Pothier, Joël F.; Rezzonico, Fabio; Pilonetto, Marcelo; Smits, Theo H.M.; Tuon, Felipe Francisco,

2023.

Dissemination of NDM-producing bacteria in Southern Brazil.

Diagnostic Microbiology and Infectious Disease.

106(2), S. 115930.

Verfügbar unter: https://doi.org/10.1016/j.diagmicrobio.2023.115930
Pothier, Joël F.; Bolt, Valentin; Arn, Fabienne; Frasson, David; Rhyner, Nicola; Sievers, Martin,

2023.

High-quality draft genome sequence of Streptomyces albidoflavus CCOS 2040, isolated from a Swiss soil sample.

Microbiology Resource Announcements.

12(3), S. e01225-22.

Verfügbar unter: https://doi.org/10.1128/mra.01225-22
Sulja, Arburon; Pothier, Joël F.; Blom, Jochen; Moretti, Chiaraluce; Buonaurio, Roberto; Rezzonico, Fabio; Smits, Theo H. M.,

2022.

Comparative genomics to examine the endophytic potential of Pantoea agglomerans DAPP-PG 734.

BMC Genomics.

23(742).

Verfügbar unter: https://doi.org/10.1186/s12864-022-08966-y
Schmautz, Zala; Walser, Jean-Claude; Espinal, Carlos A.; Gartmann, Florentina; Scott, Benjamin; Pothier, Joël F.; Frossard, Emmanuel; Junge, Ranka; Smits, Theo H. M.,

2022.

Microbial diversity across compartments in an aquaponic system and its connection to the nitrogen cycle.

Science of the Total Environment.

852(158426).

Verfügbar unter: https://doi.org/10.1016/j.scitotenv.2022.158426
Dia, Nay C.; Cottyn, Bart; Blom, Jochen; Smits, Theo H. M.; Pothier, Joël F.,

2022.

Differentiation of the Xanthomonas hortorum – Xanthomonas hydrangeae species complex using sensitive and selective LAMP assays.

Frontiers in Agronomy.

4(898778).

Verfügbar unter: https://doi.org/10.3389/fagro.2022.898778
Silva, Kayla Gisela; Martins, Leonor; Teixeira, Miguel; Pothier, Joël F.; Tavares, Fernando,

2022.

DNA markers for detection and genotyping of Xanthomonas euroxanthea.

Microorganisms.

10(6), S. 1078.

Verfügbar unter: https://doi.org/10.3390/microorganisms10061078
Kałużna, Monika; Pothier, Joël F.,

2022.

Complete genome sequence data of two Xanthomonas arboricola strains isolated from blueberry plants displaying bacterial leaf blight in Poland.

Phytopathology.

112(8), S. 1814-1818.

Verfügbar unter: https://doi.org/10.1094/PHYTO-11-21-0484-A
Ruinelli, Michela; Blom, Jochen; Smits, Theo H. M.; Pothier, Joël F.,

2022.

Comparative genomics of Prunus-associated members of the Pseudomonas syringae species complex reveals traits supporting co-evolution and host adaptation.

Frontiers in Microbiology.

13(804681).

Verfügbar unter: https://doi.org/10.3389/fmicb.2022.804681
Dia, Nay C.; Morinière, Lucas; Cottyn, Bart; Bernal, Eduardo; Jacobs, Jonathan M.; Koebnik, Ralf; Osdaghi, Ebrahim; Potnis, Neha; Pothier, Joël F.,

2022.

Xanthomonas hortorum – beyond gardens : current taxonomy, genomics, and virulence repertoires.

Molecular Plant Pathology.

23(5), S. 597-621.

Verfügbar unter: https://doi.org/10.1111/mpp.13185
Hakalová, Eliška; Čechová, Jana; Tekielska, Dorota A.; Eichmeier, Ales; Pothier, Joël F.,

2022.

Combined effect of thyme and clove phenolic compounds on Xanthomonas campestris pv. campestris and biocontrol of black rot disease on cabbage seeds.

Frontiers in Microbiology.

13.

Verfügbar unter: https://doi.org/10.3389/fmicb.2022.1007988
Knecht, Leandra E.; Born, Yannick; Pelludat, Cosima; Pothier, Joël F.; Smits, Theo H. M.; Loessner, Martin J.; Fieseler, Lars,

2022.

Spontaneous resistance of Erwinia amylovora against bacteriophage Y2 affects infectivity of multiple phages.

Frontiers in Microbiology.

13(908346).

Verfügbar unter: https://doi.org/10.3389/fmicb.2022.908346
Dia, Nay C.; Van Vaerenbergh, Johan; Van Malderghem, Cinzia; Blom, Jochen; Smits, Theo H. M.; Cottyn, Bart; Pothier, Joël F.,

2021.

Xanthomonas hydrangeae sp. nov., a novel plant pathogen isolated from Hydrangea arborescens.

International Journal of Systematic and Evolutionary Microbiology.

71(12).

Verfügbar unter: https://doi.org/10.1099/ijsem.0.005163
Kałużna, Monika; Fischer‐Le Saux, Marion; Pothier, Joël; Jacques, Marie‐Agnès; Obradović, Aleksa; Tavares, Fernando; Stefani, Emilio,

2021.

Xanthomonas arboricola pv. juglandis and pv. corylina: Brothers or distant relatives? : genetic clues, epidemiology, and insights for disease management.

Molecular Plant Pathology.

22(12), S. 1481-1499.

Verfügbar unter: https://doi.org/10.1111/mpp.13073
Cottyn, B.; De Paepe, B.; Dia, Nay; Van Malderghem, C.; Pothier, Joël; Van Vaerenbergh, J.,

2021.

First report of bacterial leaf spot of Hydrangea in retail nurseries in Belgium caused by strains assigned to a new Xanthomonas hortorum clade.

New Disease Reports.

43(2), S. e12008.

Verfügbar unter: https://doi.org/10.1002/ndr2.12008
Catara, Vittoria; Cubero, Jaime; Pothier, Joël; Bosis, Eran; Bragard, Claude; Đermić, Edyta; Holeva, Maria C.; Jacques, Marie-Agnès; Petter, Francoise; Pruvost, Olivier; Robène, Isabelle; Studholme, David J.; Tavares, Fernando; Vicente, Joana G.; Koebnik, Ralf; Costa, Joana,

2021.

Trends in molecular diagnosis and diversity studies for phytosanitary regulated Xanthomonas.

Microorganisms.

9(4), S. 862.

Verfügbar unter: https://doi.org/10.3390/microorganisms9040862
Fernandes, Camila; Martins, Leonor; Teixeira, Miguel; Blom, Jochen; Pothier, Joël; Fonseca, Nuno A.; Tavares, Fernando,

2021.

Comparative genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis strains isolated from a single walnut host tree.

Microorganisms.

9(3), S. 624.

Verfügbar unter: https://doi.org/10.3390/microorganisms9030624
Pothier, Joël F.; Kałużna, Monika; Prokić, Andjelka; Obradovic, Aleksa; Rezzonico, Fabio,

2021.

Complete genome and plasmid sequence data of three Xanthomonas arboricola pv. corylina strains, the bacterium responsible for bacterial blight of hazelnut.

Phytopathology.

112(4), S. 956-960.

Verfügbar unter: https://doi.org/10.1094/PHYTO-08-21-0356-A
Puławska, Joanna; Kałużna, Monika; Warabieda, Wojciech; Pothier, Joël F.; Gétaz, Michael; van der Wolf, Jan M.,

2020.

Transcriptome analysis of Xanthomonas fragariae in strawberry leaves.

Scientific Reports.

10(20582).

Verfügbar unter: https://doi.org/10.1038/s41598-020-77612-y
Dia, Nay C.; Rezzonico, Fabio; Smits, Theo H. M.; Pothier, Joël F.,

2020.

Complete or high-quality draft genome sequences of six Xanthomonas hortorum strains sequenced with short- and long-read technologies.

Microbiology Resource Announcements.

9(41), S. e00828-20.

Verfügbar unter: https://doi.org/10.1128/MRA.00828-20
Martins, Leonor; Fernandes, Camila; Blom, Jochen; Dia, Nay C.; Pothier, Joël F.; Tavares, Fernando,

2020.

Xanthomonas euroxanthea sp. nov. : a new xanthomonad species including pathogenic and non-pathogenic strains of walnut.

International Journal of Systematic and Evolutionary Microbiology.

70(12), S. 6024-6031.

Verfügbar unter: https://doi.org/10.1099/ijsem.0.004386
Gétaz, Michael; Puławska, Joanna; Smits, Theo H.M.; Pothier, Joël F.,

2020.

Host–pathogen interactions between Xanthomonas fragariae and its host Fragaria × ananassa investigated with a dual RNA-Seq analysis.

Microorganisms.

8(8), S. 1253.

Verfügbar unter: https://doi.org/10.3390/microorganisms8081253
Gétaz, Michael; Blom, Jochen; Smits, Theo H. M.; Pothier, Joël F.,

2020.

Comparative genomics of Xanthomonas fragariae and Xanthomonas arboricola pv. fragariae reveals intra- and interspecies variations.

Phytopathology Research.

2020(2), S. 17.

Verfügbar unter: https://doi.org/10.1186/s42483-020-00061-y
Rothen, Julian; Sapugahawatte, Dulmini Nanayakkara; Li, Carmen; Lo, Norman; Vogel, Guido; Foucault, Frédéric; Pflüger, Valentin; Pothier, Joël; Blom, Jochen; Daubenberger, Claudia; Ip, Margaret,

2020.

A simple, rapid typing method for Streptococcus agalactiae based on ribosomal subunit proteins by MALDI-TOF MS.

Scientific Reports.

10(8788).

Verfügbar unter: https://doi.org/10.1038/s41598-020-65707-5
Fossou, Romain K.; Pothier, Joël F.; Zézé, Adolphe; Perret, Xavier,

2020.

Bradyrhizobium ivorense sp. nov. as a potential local bioinoculant for Cajanus cajan cultures in Côte d’Ivoire.

International Journal of Systematic and Evolutionary Microbiology.

70(2), S. 1421-1430.

Verfügbar unter: https://doi.org/10.1099/ijsem.0.003931
Arn, Fabienne; Frasson, David; Kroslakova, Ivana; Rezzonico, Fabio; Pothier, Joël; Riedl, Rainer; Sievers, Martin,

2020.

Isolation and identification of actinomycetes strains from Switzerland and their biotechnological potential.

Chimia.

74(5), S. 382-390.

Verfügbar unter: https://doi.org/10.2533/chimia.2020.382
Schneeberger, Pierre H. H.; Fuhrimann, Samuel; Becker, Sören L.; Pothier, Joël F.; Duffy, Brion; Beuret, Christian; Frey, Jürg E.; Utzinger, Jürg,

2019.

Qualitative microbiome profiling along a wastewater system in Kampala, Uganda.

Scientific Reports.

9(1), S. 17334.

Verfügbar unter: https://doi.org/10.1038/s41598-019-53569-5
Luedin, Samuel M.; Storelli, Nicola; Danza, Francesco; Roman, Samuele; Wittwer, Matthias; Pothier, Joël F.; Tonolla, Mauro,

2019.

Mixotrophic growth under micro-oxic conditions in the purple sulfur bacterium "Thiodictyon syntrophicum".

Frontiers in Microbiology.

10(384).

Verfügbar unter: https://doi.org/10.3389/fmicb.2019.00384
Rutz, Dominik; Frasson, David; Sievers, Martin; Blom, Jochen; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H.M.,

2019.

Comparative genomic analysis of the biotechnological potential of the novel species Pseudomonas wadenswilerensis CCOS 864T and Pseudomonas reidholzensis CCOS 865T.

Diversity.

2019(11), S. 204.

Verfügbar unter: https://doi.org/10.3390/d11110204
Ruinelli, Michela; Blom, Jochen; Smits, Theo; Pothier, Joël,

2019.

Comparative genomics and pathogenicity potential of members of the Pseudomonas syringae species complex on Prunus spp.

BMC Genomics.

20(172).

Verfügbar unter: https://doi.org/10.1186/s12864-019-5555-y
Luedin, Samuel; Liechti, Nicole; Cox, Raymond P.; Danza, Francesco; Frigaard, Niels-Ulrik; Posth, Nicole; Pothier, Joël F.; Roman, Samuele; Storelli, Nicola; Wittwer, Matthias; Tonolla, Mauro,

2019.

Draft genome sequence of Chromatium okenii isolated from the stratified alpine Lake Cadagno.

Scientific Reports.

9(1), S. 1936.

Verfügbar unter: https://doi.org/10.1038/s41598-018-38202-1
Rutz, Dominik; Frasson, David; Sievers, Martin; Blom, Jochen; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H. M.,

2019.

High-quality draft genome sequence of Pseudomonas reidholzensis strain CCOS 865T.

Microbiology Resource Announcements.

8(3).

Verfügbar unter: https://doi.org/10.1128/MRA.01502-18
Rothen, Julian; Pothier, Joël F.; Foucault, Frédéric; Blom, Jochen; Nanayakkara, Dulmini; Li, Carmen; Ip, Margaret; Tanner, Marcel; Vogel, Guido; Pflüger, Valentin; Daubenberger, Claudia A.,

2019.

Subspecies typing of Streptococcus agalactiae based on ribosomal subunit protein mass variation by MALDI-TOF MS.

Frontiers in Microbiology.

10(471).

Verfügbar unter: https://doi.org/10.3389/fmicb.2019.00471
Smits, Theo H.M.; Rezzonico, Fabio; Frasson, David; Vesga, Pilar; Vacheron, Jordan; Blom, Jochen; Pothier, Joël F.; Keel, Christoph; Maurhofer, Monika; Sievers, Martin,

2019.

Updated genome sequence and annotation for the full genome of Pseudomonas protegens CHA0.

Microbiology Resource Announcements.

8(39).

Verfügbar unter: https://doi.org/10.1128/MRA.01002-19
Rutz, Dominik; Frasson, David; Sievers, Martin; Blom, Jochen; Rezzonico, Fabio; Pothier, Joël; Smits, Theo,

2018.

High-quality draft genome sequence of pseudomonas wadenswilerensis CCOS 864T.

Microbiology Resource Announcements.

7(16).

Verfügbar unter: https://doi.org/10.1128/MRA.01059-18
Fernandes, Camila; Blom, Jochen; Pothier, Joël F.; Tavares, Fernando,

2018.

High-quality draft genome sequence of xanthomonas arboricola pv. juglandis CPBF 1521, isolated from leaves of a symptomatic walnut tree in Portugal without a past of phytosanitary treatment.

Microbiology Resource Announcements.

7(16).

Verfügbar unter: https://doi.org/10.1128/MRA.00887-18
Fernandes, Camila; Blom, Jochen; Pothier, Joël F.; Tavares, Fernando,

2018.

High-Quality draft genome sequence of xanthomonas sp. strain CPBF 424, a walnut-pathogenic strain with atypical features.

Microbiology Resource Announcements.

7(15).

Verfügbar unter: https://doi.org/10.1128/MRA.00921-18
Normand, Philippe; Nouioui, Imen; Pujic, Petar; Fournier, Pascale; Dubost, Audrey; Schwob, Guillaume; Klenk, Hans-Peter; Nguyen, Agnès; Abrouk, Danis; Herrera-Belaroussi, Aude; Pothier, Joël F.; Pflüger, Valentin; Fernandez, Maria P.,

2018.

Frankia canadensis sp. nov., isolated from root nodules of Alnus incana subspecies rugosa.

International Journal of Systematic and Evolutionary Microbiology.

68, S. 3001-3011.

Verfügbar unter: https://doi.org/10.1099/ijsem.0.002939
Luedin, Samuel M.; Pothier, Joël F.; Danza, Francesco; Storelli, Nicola; Frigaard, Niels-Ulrik; Wittwer, Matthias; Tonolla, Mauro,

2018.

Complete genome sequence of “Thiodictyon syntrophicum” sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno.

Standards in Genomic Sciences.

13(14).

Verfügbar unter: https://doi.org/10.1186/s40793-018-0317-z
Knecht, Leandra E.; Born, Yannick; Pothier, Joël F.; Loessner, Martin J.; Fieseler, Lars,

2018.

Complete genome sequences of erwinia amylovora phages vB_EamP-S2 and vB_EamM-Bue1.

Microbiology Resource Announcements.

7(3).

Verfügbar unter: https://doi.org/10.1128/MRA.00891-18
Gétaz, Michael; Krijger, Marjon; Rezzonico, Fabio; Smits, Theo; van der Wolf, Jan M.; Pothier, Joël F.,

2018.

Genome-based population structure analysis of the strawberry plant pathogen Xanthomonas fragariae reveals two distinct groups that evolved independently before its species description.

Microbial Genomics.

4(7).

Verfügbar unter: https://doi.org/10.1099/mgen.0.000189
Gétaz, Michael; Baeyen, Steve; Blom, Jochen; Maes, Martine; Cottyn, Bart; Pothier, Joël F.,

2018.

High-quality draft genome sequences of five xanthomonas arboricola pv. fragariae isolates.

Genome Announcements.

6(7).

Verfügbar unter: https://doi.org/10.1128/genomeA.01585-17
Rezzonico, Fabio; Duffy, Brion; Smits, Theo H.M.; Pothier, Joël F.,

2017.

Erwinia species identification using matrix-assisted laser desorption ionization-time of flight mass spectrometry.

Journal of Plant Pathology.

99(Special issue), S. 121-129.

Verfügbar unter: https://doi.org/10.4454/jpp.v99i0.3916
Gétaz, Michael; Bühlmann, Andreas; Schneeberger, Pierre H. H.; Van Malderghem, Cinzia; Duffy, Brion; Maes, Martine; Pothier, Joël F.; Cottyn, Bart,

2017.

A diagnostic tool for improved detection of Xanthomonas fragariae using a rapid and highly specific LAMP assay designed with comparative genomics.

Plant Pathology.

66(7), S. 1094-1102.

Verfügbar unter: https://doi.org/10.1111/ppa.12665
Kamber, Tim; Pothier, Joël; Pelludat, Cosima; Rezzonico, Fabio; Duffy, Brion; Smits, Theo,

2017.

Role of the type VI secretion systems during disease interactions of Erwinia amylovora with its plant host.

BMC Genomics.

16(628), S. 1-12.

Verfügbar unter: https://doi.org/10.1186/s12864-017-4010-1
Gétaz, Michael; van der Wolf, Jan; Blom, Jochen; Pothier, Joël F.,

2017.

Complete genome sequences of three isolates of Xanthomonas fragariae, the bacterium responsible for angular leaf spots on strawberry plants.

Genome Announcements.

5(32).

Verfügbar unter: https://doi.org/10.1128/genomeA.00642-17
Ruinelli, Michela; Blom, Jochen; Pothier, Joël F.,

2017.

Complete genome sequence of Pseudomonas viridiflava CFBP 1590: isolated from diseased cherry in France.

Genome Announcements.

5(30).

Verfügbar unter: https://doi.org/10.1128/genomeA.00662-17
Rothen, Julian; Schindler, Tobias; Pothier, Joël F.; Younan, Mario; Certa, Ulrich; Daubenberger, Claudia; Pflüger, Valentin; Jores, Joerg,

2017.

Draft genome sequences of seven Streptococcus agalactiae strains isolated from Camelus dromedarius at the horn of Africa.

Genome Announcements.

5(28).

Verfügbar unter: https://doi.org/10.1128/genomeA.00525-17
Schneeberger, Pierre H.H.; Pothier, Joël F.; Bühlmann, Andreas; Duffy, Brion; Beuret, Christian; Utzinger, Jürg; Frey, Jürg E.,

2017.

Development and evaluation of a bioinformatics approach for designing molecular assays for viral detection.

PLOS ONE.

12(5).

Verfügbar unter: https://doi.org/10.1371/journal.pone.0178195
Kałużna, Monika; Willems, Anne; Pothier, Joël F.; Ruinelli, Michela; Sobiczewski, Piotr; Puławska, Joanna,

2016.

Pseudomonas cerasi sp. nov. (non Griffin, 1911) isolated from diseased tissue of cherry.

Systematic and Applied Microbiology.

39(6), S. 370-377.

Verfügbar unter: https://doi.org/10.1016/j.syapm.2016.05.005
Ruinelli, Michela; Schneeberger, Pierre H.H; Ferrante, Patrizia; Bühlmann, Andreas; Scortichini, Marco; Vanneste, Joel L.; Duffy, Brion; Pothier, Joël F.,

2016.

Comparative genomics-informed design of two LAMP detection assays for detection of the kiwifruit pathogen Pseudomonas syringae pv. actinidiae and discrimination of isolates belonging to the pandemic biovar 3.

Plant Pathology.

66(1), S. 140-149.

Verfügbar unter: https://doi.org/10.1111/ppa.12551
Schneeberger, Pierre H.H.; Becker, Sören L.; Pothier, Joël F.; Duffy, Brion; N'Goran, Eliézer K.; Beuret, Christian; Frey, Jürg E.; Utzinger, Jürg,

2016.

Metagenomic diagnostics for the simultaneous detection of multiple pathogens in human stool specimens from Côte d’Ivoire : a proof-of-concept study.

Infection, Genetics and Evolution.

40, S. 389-397.

Verfügbar unter: https://doi.org/10.1016/j.meegid.2015.08.044
Puławska, Joanna; Kuzmanović, Nemanja; Willems, Anne; Pothier, Joël F.,

2016.

Pararhizobium polonicum sp. nov. isolated from tumors on stone fruit rootstocks.

Systematic and Applied Microbiology.

39(3), S. 164-169.

Verfügbar unter: https://doi.org/10.1016/j.syapm.2016.03.002
Kamber, Tim; Buchmann, Jan P.; Pothier, Joël; Smits, Theo; Wicker, Thomas; Duffy, Brion,

2016.

Fire blight disease reactome : RNA-seq transcriptional profile of apple host plant defence responses to Erwinia amylovora pathogen infection.

Scientific Reports.

6(21600).

Verfügbar unter: https://doi.org/10.1038/srep21600
Konavko, Dmitrijs; Malchev, Svetoslav; Pothier, Joël F.; Jundzis, Māris; Moročko-Bičevska, Inga; Rezzonico, Fabio,

2016.

Diversity and host range of Pseudomonas in fruit tree species in Latvia.

Acta Horticulturae.

1149, S. 25-30.

Verfügbar unter: https://doi.org/10.17660/ActaHortic.2016.1149.5
Smits, Theo H. M.; Pothier, Joël F.; Ruinelli, Michela; Blom, Jochen; Frasson, David; Koechli, Chantal; Fabbri, Carlotta; Brandl, Helmut; Duffy, Brion; Sievers, Martin,

2015.

Complete genome sequence of the cyanogenic phosphate-solubilizing Pseudomonas sp. strain CCOS 191 : a close relative of Pseudomonas mosseli.

Genome Announcements.

3(3).

Verfügbar unter: https://doi.org/10.1128/genomeA.00616-15
Palacio-Bielsa, Ana; López-Soriano, Pablo; Bühlmann, Andreas; van Doorn, Joop; Pham, Khanh; Cambra, Miguel A.; Berruete, Isabel M.; Pothier, Joël F.; Duffy, Brion; Olmos, Antonio; López, María M.,

2015.

Evaluation of a real-time PCR and a loop-mediated isothermal amplification for detection of Xanthomonas arboricola pv. pruni in plant tissue samples.

Journal of Microbiological Methods.

112, S. 36-39.

Verfügbar unter: https://doi.org/10.1016/j.mimet.2015.03.005
Ziegler, Dominik; Pothier, Joël F.; Ardley, Julie; Kouakou Fossou, Romain; Pflüger, Valentin; de Meyer, Sofie; Vogel, Guido; Tonolla, Mauro; Howieson, John; Reeve, Wayne; Perret, Xavier,

2015.

Ribosomal protein biomarkers provide root nodule bacterial identification by MALDI-TOF MS.

Applied Microbiology and Biotechnology.

99(13), S. 5547-5562.

Verfügbar unter: https://doi.org/10.1007/s00253-015-6515-3
Brankatschk, Kerstin; Kamber, Tim; Pothier, Joël F.; Duffy, Brion; Smits, Theo H.M.,

2014.

Transcriptional profile of Salmonella enterica subsp. enterica serovar Weltevreden during alfalfa sprout colonization.

Microbial Biotechnology.

7(6), S. 528-544.

Verfügbar unter: https://doi.org/10.1111/1751-7915.12104
Bühlmann, Andreas; Dreo, Tanja; Rezzonico, Fabio; Pothier, Joël F.; Smits, Theo H. M.; Ravnikar, Maja; Frey, Jürg E.; Duffy, Brion,

2014.

Phylogeography and population structure of the biologically invasive phytopathogen Erwinia amylovora inferred using minisatellites.

Environmental Microbiology.

16(7), S. 2112-2125.

Verfügbar unter: https://doi.org/10.1111/1462-2920.12289
van der Wolf, Jan M.; Nijhuis, Els H.; Kowalewska, Malgorzata J.; Saddler, Gerry S.; Parkinson, Neil; Elphinstone, John G.; Pritchard, Leighton; Toth, Ian K.; Lojkowska, Ewa; Potrykus, Marta; Waleron, Malgorzata; de Vos, Paul; Cleenwerck, Ilse; Pirhonen, Minna; Garlant, Linda; Hélias, Valérie; Pothier, Joël F.; Pflüger, Valentin; Duffy, Brion; Tsror, Leah; Manulis, Shula,

2014.

Dickeya solani sp. nov., a pectinolytic plant-pathogenic bacterium isolated from potato (Solanum tuberosum).

International Journal of Systematic and Evolutionary Microbiology.

64, S. 768-774.

Verfügbar unter: https://doi.org/10.1099/ijs.0.052944-0
Vandroemme, Joachim; Cottyn, Bart; Pothier, Joël F.; Pflüger, Valentin; Duffy, Brion; Maes, Martine,

2013.

Xanthomonas arboricola pv. fragariae : what's in a name?.

Plant Pathology.

62(5), S. 1123-1131.

Verfügbar unter: https://doi.org/10.1111/ppa.12028
Socquet-Juglard, Didier; Duffy, Brion; Pothier, Joël F.; Christen, Danilo; Gessler, Cesare; Pattochi, Andrea,

2013.

Identification of a major QTL for Xanthomonas arboricola pv. pruni resistance in apricot.

Tree Genetics & Genomes.

9(2), S. 409-421.

Verfügbar unter: https://doi.org/10.1007/s11295-012-0562-z
Bühlmann, Andreas; Pothier, F.; Rezzonico, Fabio; Smits, Theo H. M.; Andreou, Michael; Boonham, Neil; Duffy, Brion; Frey, Jürg E.,

2013.

Erwinia amylovora loop-mediated isothermal amplification (LAMP) assay for rapid pathogen detection and on-site diagnosis of fire blight.

Journal of Microbiological Methods.

92(3), S. 332-339.

Verfügbar unter: https://doi.org/10.1016/j.mimet.2012.12.017
Socquet-Juglard, Didier; Kamber, Tim; Pothier, Joël F.; Christen, Danilo; Gessler, Cesare; Duffy, Brion; Patocchi, Andrea,

2013.

Comparative RNA-Seq analysis of early-infected peach leaves by the invasive phytopathogen Xanthomonas arboricola pv. pruni.

PLOS ONE.

8(1).

Verfügbar unter: https://doi.org/10.1371/journal.pone.0054196
Bühlmann, Andreas; Pothier, Joël F.; Tomlinson, Jennifer A.; Frey, Jürg F.; Boonham, N.; Smits, Theo H.M.; Duffy, Brion,

2012.

Genomics-informed design of loop-mediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific level.

Plant Pathology.

62(2), S. 475-484.

Verfügbar unter: https://doi.org/10.1111/j.1365-3059.2012.02654.x

Konferenzbeiträge, peer-reviewed

Kaufmann, Moritz; Schüle, Martin; Smits, Theo; Pothier, Joël,

2020.

Typing plasmids with distributed sequence representation [Paper].

In:

Schilling, Frank-Peter; Stadelmann, Thilo, Hrsg.,

Artificial Neural Networks in Pattern Recognition.

9th IAPR TC 3 Workshop on Artificial Neural Networks for Pattern Recognition (ANNPR'20), Winterthur, Switzerland, 2-4 September 2020.

Cham:

Springer.

S. 200-210.

Lecture Notes in Computer Science ; 12294.

Verfügbar unter: https://doi.org/10.1007/978-3-030-58309-5_16
Kałużna, Monika; Willems, Anne; Pothier, Joël F.; Ruinelli, Michela; Sobiczewski, Piotr; Puławska, Joanna,

2016.

Characterization and genetic diversity of causal agent of stone fruit bacterial canker Pseudomonas cerasi : a new pathogen of cherry [Paper].

In:

II International Workshop on Bacterial Diseases of Stone Fruits and Nuts.

II International Workshop on Bacterial Diseases of Stone Fruits and Nuts, Izmir, Turkey, 21 April 2015.

International Society for Horticultural Science.

S. 9-14.

Verfügbar unter: https://doi.org/10.17660/ActaHortic.2016.1149.2

Weitere Publikationen

Aspin, Andrew; Cole, Jennifer; Pothier, Joël,

2023.

PM 7/65 (2) Xanthomonas fragariae.

EPPO Bulletin

; 53(2).

Wiley.

Verfügbar unter: https://doi.org/10.1111/epp.12916
Costa, Joana; Pothier, Joël F.; Boch, Jens; Stefani, Emilio; Koebnik, Ralf,

2022.

Integrating science on Xanthomonas and Xylella for integrated plant disease management.

Microorganisms.

11(1), S. 6.

Verfügbar unter: https://doi.org/10.3390/microorganisms11010006
Costa, Joana; Pothier, Joël F.; Boch, Jens; Stefani, Emilio; Jacques, Marie-Agnès; Catara, Vittoria; Koebnik, Ralf,

2021.

Integrating science on Xanthomonadaceae for sustainable plant disease management in Europe.

Molecular Plant Pathology.

22(12), S. 1461-1463.

Verfügbar unter: https://doi.org/10.1111/mpp.13150
Stefani, Emilio; Loreti, Stefania; Costa, Joana; Cunty, Amandine; Pothier, Joël F.,

2021.

PM 7/120 (2) Pseudomonas syringae pv. actinidiae.

EPPO Bulletin

; 51(3).

Wiley.

Verfügbar unter: https://doi.org/10.1111/epp.12782
Saponari, Maria; Gétaz, Michael; Palkovics, László; Kuzmanović, Nemanja; Puławska, Joanna; Ruinelli, Michela; Pothier, Joël; Obradović, Aleksa; Boscia, Donato; Végh, Anita; Kałużna, Monika,

2017.

Bacterial diseases

.

In:

Quero-García, José; Iezzoni, Amy; Puławska, Joanna; Lang, Gregory, Hrsg.,

Cherries : botany, production and uses.

Wallingford:

CAB International.

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